AlphaFold3 Has Effectively Solved Core Structural Biochemistry
#1AlphaFold2 (DeepMind, 2021) achieved a median GDT score of 92.4 on CASP14 targets — effectively matching experimental accuracy for many protein classes. AlphaFold3 (May 2024) extended this to protein-ligand, protein-DNA, protein-RNA, and protein-small molecule complexes using a diffusion-based architecture, directly attacking the drug discovery and structural biology use cases. The EMBL-EBI AlphaFold Database now contains predicted structures for over 214 million proteins — essentially the entire known proteome — freely accessible to anyone with a browser, eliminating the competitive moat of expensive structural biology infrastructure.